KCNJ6 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KCNJ6

Potassium voltage-gated channel subfamily J member 6. (416 aa)

Predicted Functional Partners:

SLC12A6

0.528

LOC101067414

0.528

kcnj3

0.528

H2T831_TAKRU

0.524

LOC101078979

0.521

GNG4

0.517

gng2

0.517

GNG4-2

0.517

LOC101077498

0.509

LOC101074575

0.509

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GNG4	H2T831_TAKRU	ENSTRUP00000063062	ENSTRUP00000020821	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4.	Potassium voltage-gated channel, subfamily J, member 19b.	0.553
GNG4	KCNJ6	ENSTRUP00000063062	ENSTRUP00000015166	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4.	Potassium voltage-gated channel subfamily J member 6.	0.517
GNG4	LOC101074575	ENSTRUP00000063062	ENSTRUP00000070100	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4.	Guanine nucleotide binding protein (G protein), beta 5a.	0.743
GNG4	LOC101077498	ENSTRUP00000063062	ENSTRUP00000019298	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4.	Guanine nucleotide binding protein (G protein), beta 5b.	0.743
GNG4	LOC101078979	ENSTRUP00000063062	ENSTRUP00000042479	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4.	Potassium voltage-gated channel subfamily J member 19a.	0.553
GNG4	kcnj3	ENSTRUP00000063062	ENSTRUP00000018658	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4.	Potassium inwardly-rectifying channel, subfamily J, member 3a.	0.557
GNG4-2	H2T831_TAKRU	ENSTRUP00000082017	ENSTRUP00000020821	G protein subunit gamma 4.	Potassium voltage-gated channel, subfamily J, member 19b.	0.553
GNG4-2	KCNJ6	ENSTRUP00000082017	ENSTRUP00000015166	G protein subunit gamma 4.	Potassium voltage-gated channel subfamily J member 6.	0.517
GNG4-2	LOC101074575	ENSTRUP00000082017	ENSTRUP00000070100	G protein subunit gamma 4.	Guanine nucleotide binding protein (G protein), beta 5a.	0.743
GNG4-2	LOC101077498	ENSTRUP00000082017	ENSTRUP00000019298	G protein subunit gamma 4.	Guanine nucleotide binding protein (G protein), beta 5b.	0.743
GNG4-2	LOC101078979	ENSTRUP00000082017	ENSTRUP00000042479	G protein subunit gamma 4.	Potassium voltage-gated channel subfamily J member 19a.	0.553
GNG4-2	kcnj3	ENSTRUP00000082017	ENSTRUP00000018658	G protein subunit gamma 4.	Potassium inwardly-rectifying channel, subfamily J, member 3a.	0.557
H2T831_TAKRU	GNG4	ENSTRUP00000020821	ENSTRUP00000063062	Potassium voltage-gated channel, subfamily J, member 19b.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4.	0.553
H2T831_TAKRU	GNG4-2	ENSTRUP00000020821	ENSTRUP00000082017	Potassium voltage-gated channel, subfamily J, member 19b.	G protein subunit gamma 4.	0.553
H2T831_TAKRU	KCNJ6	ENSTRUP00000020821	ENSTRUP00000015166	Potassium voltage-gated channel, subfamily J, member 19b.	Potassium voltage-gated channel subfamily J member 6.	0.524
H2T831_TAKRU	LOC101074575	ENSTRUP00000020821	ENSTRUP00000070100	Potassium voltage-gated channel, subfamily J, member 19b.	Guanine nucleotide binding protein (G protein), beta 5a.	0.550
H2T831_TAKRU	LOC101077498	ENSTRUP00000020821	ENSTRUP00000019298	Potassium voltage-gated channel, subfamily J, member 19b.	Guanine nucleotide binding protein (G protein), beta 5b.	0.550
H2T831_TAKRU	gng2	ENSTRUP00000020821	ENSTRUP00000076429	Potassium voltage-gated channel, subfamily J, member 19b.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.553
KCNJ6	GNG4	ENSTRUP00000015166	ENSTRUP00000063062	Potassium voltage-gated channel subfamily J member 6.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4.	0.517
KCNJ6	GNG4-2	ENSTRUP00000015166	ENSTRUP00000082017	Potassium voltage-gated channel subfamily J member 6.	G protein subunit gamma 4.	0.517