Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phc3Uncharacterized protein. (856 aa)    
Predicted Functional Partners:
LOC101068461
Chromobox protein homolog 8-like.
    
 0.996
rnf2
Ring finger protein 2.
    
 0.993
LOC101071244
Chromo domain-containing protein.
    
 0.986
cbx2
Chromobox homolog 2 (Drosophila Pc class).
    
 0.986
LOC101076082
Chromobox 4.
    
 0.979
LOC101075073
Chromobox homolog 4 (Pc class homolog, Drosophila).
    
 0.979
bmi1
Bmi1 polycomb ring finger oncogene 1a.
    
 0.968
PCGF2
Polycomb group ring finger 2.
    
 0.968
cbx6
Chromobox homolog 6a.
    
 0.961
LOC101073773
Polyhomeotic homolog 2b (Drosophila).
    
0.935
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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