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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yipf5Protein YIPF. (257 aa)    
Predicted Functional Partners:
LOC101078409
Sorting and assembly machinery component 50 homolog, like.
 
 
    0.894
yif1b
Yip1 interacting factor homolog B (S. cerevisiae).
   
 
 0.855
yif1a
Yip1 interacting factor homolog A (S. cerevisiae).
   
 
 0.855
yipf3
Yip1 domain family, member 3.
   
 
 0.834
yipf1
Protein YIPF.
   
 
 0.760
LOC101066417
Protein YIPF.
   
 
 0.760
derl2
Derlin-2/3.
   
 0.719
rabac1
PRA1 family protein.
   
 
 0.700
IQCA1L
ATPase_AAA_core domain-containing protein.
    
 0.674
LOC101073251
Uncharacterized protein.
   
 
 0.667
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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