Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101062470Zinc finger protein 574. (918 aa)    
Predicted Functional Partners:
Haus3
HAUS augmin-like complex, subunit 3.
    
 
 0.790
LOC101078763
Sodium/potassium-transporting ATPase subunit alpha.
    
 0.705
myct1
Myc target 1b.
      
 0.700
plekhj1
Pleckstrin homology domain containing, family J member 1.
    
 0.658
LOC101068307
G-patch domain-containing protein.
      
 0.612
pafah1b3
Platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit.
      
 0.606
smpdl3a
Acid sphingomyelinase-like phosphodiesterase.
      
 0.605
DBI
Diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein).
      
 0.548
ptprc
Uncharacterized protein.
   
 
 0.526
LOC101063965
Golgi glycoprotein 1b.
      
 0.512
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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