Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
brms1lUncharacterized protein. (305 aa)    
Predicted Functional Partners:
sap30l
Sap30-like.
   
 0.913
arid4b
Translocase of outer mitochondrial membrane 20.
   
 0.872
arid4a
AT rich interactive domain 4A (RBP1-like).
   
 0.872
ENSTRUP00000064256
annotation not available
   
 0.872
Arid4b
Uncharacterized protein.
   
 0.872
suds3
SDS3 homolog, SIN3A corepressor complex component.
    
 0.831
sinhcaf
SIN3-HDAC complex associated factor.
    
 
 0.808
LOC101074167
WD_REPEATS_REGION domain-containing protein.
    
 0.800
rbbp4
Retinoblastoma binding protein 4.
    
 0.800
sin3a
SIN3 transcription regulator family member Aa.
   
 0.755
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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