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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smpdl3bAcid sphingomyelinase-like phosphodiesterase. (441 aa)    
Predicted Functional Partners:
cachd1
Cache domain containing 1.
      
 0.600
tmem259
Transmembrane protein 259.
      
 0.587
smpd2
Sphingomyelin phosphodiesterase 2b, neutral membrane (neutral sphingomyelinase).
      
 0.577
emc1
ER membrane protein complex subunit 1.
   
  
 0.576
themis2
Thymocyte selection associated family member 2.
      
 0.565
xkr8
XK-related protein.
 
    
 0.563
stt3a
STT3 oligosaccharyltransferase complex catalytic subunit A.
      
 0.562
prune1
Prune exopolyphosphatase.
    
 
 0.556
mrps11
Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.
      
 0.544
sptlc1
Serine palmitoyltransferase, long chain base subunit 1.
      
 0.539
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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