Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101073498Uncharacterized protein. (708 aa)    
Predicted Functional Partners:
cul3
Cullin 3a; Belongs to the cullin family.
    
 0.932
LOC101077791
Uncharacterized protein.
    
 0.859
H2TLH5_TAKRU
Uncharacterized protein.
    
 0.852
gps1
G protein pathway suppressor 1.
    
  0.824
itsn1
Intersectin 1 (SH3 domain protein).
    
 0.789
pde5a
Phosphodiesterase.
    
 0.766
COPS6
COP9 signalosome subunit 6.
    
   0.751
dock4
Dedicator of cytokinesis 4b; Belongs to the DOCK family.
   
 0.733
eloc
Elongin C paralog a; Belongs to the SKP1 family.
   
  
 0.706
cops2
COP9 signalosome subunit 2.
   
  0.702
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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