STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101063742Cone-rod homeobox. (294 aa)    
Predicted Functional Partners:
NR2E3
Nuclear receptor subfamily 2 group E member 3.
   
 
 0.856
LOC101076672
Neural retina leucine zipper.
    
 
 0.796
thrb
Thyroid hormone receptor beta.
   
 
 0.748
LOC101078749
Nuclear receptor subfamily 1, group D, member 4a.
    
 
 0.721
LOC101073854
Retinoic acid receptor, gamma b.
    
 
 0.655
rarg
Retinoic acid receptor gamma a.
    
 
 0.655
LOC101073701
MyoD family inhibitor.
    
   0.569
ENSTRUP00000069045
MyoD family inhibitor-like.
    
   0.569
mmaa
Metabolism of cobalamin associated A.
      
 0.543
nr2e1
Nuclear receptor subfamily 2, group E, member 1.
   
 
 0.527
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.