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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101063742Cone-rod homeobox. (294 aa)    
Predicted Functional Partners:
NR2E3
Nuclear receptor subfamily 2 group E member 3.
   
 
 0.800
LOC101076672
Neural retina leucine zipper.
    
 
 0.665
coq2
4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate.
      
 0.660
neurod1
Neurogenic differentiation factor.
   
  
 0.590
nr2e1
Nuclear receptor subfamily 2, group E, member 1.
   
 
 0.553
LOC101078749
Nuclear receptor subfamily 1, group D, member 4a.
    
 
 0.549
thrb
Thyroid hormone receptor beta.
   
 
 0.540
LOC101068676
Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.
      
 0.527
LOC101069550
Oogenesis-related gene.
      
 0.501
LOC101072412
Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.
      
 0.495
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.