STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101063363Carbonic anhydrase IV b; Belongs to the alpha-carbonic anhydrase family. (305 aa)    
Predicted Functional Partners:
rpf2
Ribosome production factor 2 homolog.
   
 
 0.607
H2TBQ8_TAKRU
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
 
 0.531
LOC101073485
Carbonic anhydrase XIV; Belongs to the alpha-carbonic anhydrase family.
  
  
0.522
rpl11
Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
   
 
 0.516
ca12
Carbonic anhydrase XII; Belongs to the alpha-carbonic anhydrase family.
  
  
0.494
grwd1
Glutamate-rich WD repeat containing 1.
   
  
 0.494
tsr2
TSR2 ribosome maturation factor.
   
  
 0.455
wdr43
WD repeat domain 43.
   
    0.444
LOC105418692
Uncharacterized protein.
   
  
 0.442
RPL5
Ribosomal protein L5b.
    
 
 0.441
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.