Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
alkbh7AlkB homolog 7. (231 aa)    
Predicted Functional Partners:
alkbh1
AlkB homolog 1, histone H2A dioxygenase.
      
 0.875
Alkbh6
Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6.
   
  
 0.779
alkbh8
AlkB homolog 8, tRNA methyltransferase.
      
 0.718
Avpi1
TC1 domain-containing protein.
      
 0.698
alkbh2
AlkB homolog 2, alpha-ketoglutarate-dependent dioxygenase.
      
 0.698
ndufb7
NADH:ubiquinone oxidoreductase subunit B7.
   
    0.697
pms1
PMS1 homolog 1, mismatch repair system component.
      
 0.696
nckipsd
NCK interacting protein with SH3 domain.
      
 0.693
fto
FTO alpha-ketoglutarate dependent dioxygenase.
     
 0.630
pigp
Phosphatidylinositol N-acetylglucosaminyltransferase subunit P; Part of the complex catalyzing the transfer of N- acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis.
   
  
 0.629
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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