swt1 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

swt1

SWT1 RNA endoribonuclease homolog. (907 aa)

Predicted Functional Partners:

trmt1l

0.783

ivns1abp

0.735

agtrap

0.713

psmc3ip

0.711

coq3

0.710

LOC101064597

0.576

LOC101075541

0.576

cog6

0.576

DDX39A

0.576

smg5

0.571

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX39A	swt1	ENSTRUP00000074207	ENSTRUP00000015718	DExD-box helicase 39A.	SWT1 RNA endoribonuclease homolog.	0.576
LOC101064597	swt1	ENSTRUP00000001947	ENSTRUP00000015718	Uncharacterized protein.	SWT1 RNA endoribonuclease homolog.	0.576
LOC101075541	swt1	ENSTRUP00000034304	ENSTRUP00000015718	Uncharacterized protein.	SWT1 RNA endoribonuclease homolog.	0.576
agtrap	swt1	ENSTRUP00000056123	ENSTRUP00000015718	Angiotensin II receptor-associated protein.	SWT1 RNA endoribonuclease homolog.	0.713
cog6	swt1	ENSTRUP00000062194	ENSTRUP00000015718	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	SWT1 RNA endoribonuclease homolog.	0.576
coq3	psmc3ip	ENSTRUP00000000572	ENSTRUP00000060027	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	PSMC3 interacting protein.	0.710
coq3	swt1	ENSTRUP00000000572	ENSTRUP00000015718	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	SWT1 RNA endoribonuclease homolog.	0.710
ivns1abp	swt1	ENSTRUP00000014627	ENSTRUP00000015718	Influenza virus NS1A binding protein a.	SWT1 RNA endoribonuclease homolog.	0.735
ivns1abp	trmt1l	ENSTRUP00000014627	ENSTRUP00000005540	Influenza virus NS1A binding protein a.	tRNA (guanine(26)-N(2))-dimethyltransferase.	0.732
psmc3ip	coq3	ENSTRUP00000060027	ENSTRUP00000000572	PSMC3 interacting protein.	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	0.710
psmc3ip	swt1	ENSTRUP00000060027	ENSTRUP00000015718	PSMC3 interacting protein.	SWT1 RNA endoribonuclease homolog.	0.711
smg5	swt1	ENSTRUP00000031846	ENSTRUP00000015718	SMG5 nonsense mediated mRNA decay factor.	SWT1 RNA endoribonuclease homolog.	0.571
swt1	DDX39A	ENSTRUP00000015718	ENSTRUP00000074207	SWT1 RNA endoribonuclease homolog.	DExD-box helicase 39A.	0.576
swt1	LOC101064597	ENSTRUP00000015718	ENSTRUP00000001947	SWT1 RNA endoribonuclease homolog.	Uncharacterized protein.	0.576
swt1	LOC101075541	ENSTRUP00000015718	ENSTRUP00000034304	SWT1 RNA endoribonuclease homolog.	Uncharacterized protein.	0.576
swt1	agtrap	ENSTRUP00000015718	ENSTRUP00000056123	SWT1 RNA endoribonuclease homolog.	Angiotensin II receptor-associated protein.	0.713
swt1	cog6	ENSTRUP00000015718	ENSTRUP00000062194	SWT1 RNA endoribonuclease homolog.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.576
swt1	coq3	ENSTRUP00000015718	ENSTRUP00000000572	SWT1 RNA endoribonuclease homolog.	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	0.710
swt1	ivns1abp	ENSTRUP00000015718	ENSTRUP00000014627	SWT1 RNA endoribonuclease homolog.	Influenza virus NS1A binding protein a.	0.735
swt1	psmc3ip	ENSTRUP00000015718	ENSTRUP00000060027	SWT1 RNA endoribonuclease homolog.	PSMC3 interacting protein.	0.711