STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
samd13SAM domain-containing protein. (97 aa)    
Predicted Functional Partners:
trrap
Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.
   
 0.826
meaf6
MYST/Esa1-associated factor 6.
   
 0.824
ruvbl1
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
   
 0.815
dmap1
DNA methyltransferase 1 associated protein 1.
   
 0.755
actl6a
Actin-like 6A; Belongs to the actin family.
   
 0.716
atm
TAN domain-containing protein.
   
 0.676
LOC101069329
KAT8 regulatory NSL complex subunit 3.
    
 0.659
Tex30
Testis expressed 30.
    
 0.659
LOC101063611
Enhancer of polycomb homolog.
   
 0.632
LOC101066125
Enhancer of polycomb homolog.
   
 0.632
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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