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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101070684Ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family. (147 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
   
 0.929
gcdh
Glutaryl-CoA dehydrogenase a.
 
 
  0.879
anapc11
APC11 anaphase promoting complex subunit 11 homolog (yeast).
    
 0.853
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.847
rps27a
Ribosomal protein S27a.
   
 0.845
stub1
STIP1 homology and U-Box containing protein 1.
   
 0.845
ube2v2
Ubiquitin-conjugating enzyme E2 variant 2.
   
 0.793
zfand4
Zinc finger, AN1-type domain 4.
   
 0.788
cul3
Cullin 3a; Belongs to the cullin family.
   
 0.780
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 0.766
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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