Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
dapk3Death-associated protein kinase 3; Belongs to the protein kinase superfamily. (454 aa)    
Predicted Functional Partners:
becn1
Beclin 1.
   
 0.930
klhl20
Kelch-like family member 20.
    
 
 0.656
ENSTRUP00000008077
Calmodulin 1b.
    
 0.617
calm2
Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.
    
 0.617
calm2-2
Calmodulin 3.
    
 0.617
LOC101064505
Uncharacterized protein; Belongs to the calmodulin family.
    
 0.617
fermt2
Fermitin family member 2.
     
 0.591
unc5b
Unc-5 netrin receptor B.
    
 0.557
LOC101061845
NME/NM23 family member 8; Belongs to the NDK family.
   
 0.553
rp2
Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization.
   
  
 0.545
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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