STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101077331Transporter 1, ATP-binding cassette, sub-family B (MDR/TAP). (718 aa)    
Predicted Functional Partners:
LOC101066072
Transporter associated with antigen processing, subunit type a.
  
 
0.678
tapbp
TAP binding protein (tapasin), tandem duplicate 2.
   
 0.665
KATNAL2
Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.
  
 0.603
ENSTRUP00000070399
Katanin p60 ATPase-containing subunit A-like 2 isoform X1.
  
 0.603
LOC101065848
Proteasome subunit beta 9a.
 
 
 0.579
abcb7
ATP-binding cassette, sub-family B (MDR/TAP), member 7.
    
0.557
LOC101077988
Proteasome subunit beta 12.
 
 
 0.513
calr
Calreticulin.
   
 0.478
prkn
Ubiquitin-like domain-containing protein.
     
 0.452
pdia3
Protein disulfide-isomerase.
   
 0.444
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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