Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC101076911Semaphorin 4e; Belongs to the semaphorin family. (730 aa)    
Predicted Functional Partners:
ptprc
Uncharacterized protein.
    
 0.793
LOC101068409
Plexin b2a.
    
 0.779
LOC101078657
Sema domain-containing protein.
    
 0.779
H2UK42_TAKRU
Sema domain-containing protein.
    
 0.779
LOC101072330
Plexin b2b.
    
 0.779
LOC101061602
Ras-related protein R-Ras2-like.
    
 0.663
rras2
RAS related 2.
    
 0.663
LOC101071528
Macrophage stimulating 1 receptor a.
   
 0.618
mst1r
Macrophage stimulating 1 receptor b.
   
 0.618
met
Uncharacterized protein.
   
 0.618
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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