STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
znf142Zinc finger protein 142. (1459 aa)    
Predicted Functional Partners:
stk36
Serine/threonine kinase 36 (fused homolog, Drosophila).
   
 0.612
mrps16
Mitochondrial ribosomal protein S16.
    
 0.576
slc38a11
Solute carrier family 38 member 11.
    
 0.525
polr3c
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.496
ttl
Tubulin tyrosine ligase.
      
 0.471
ttll7
Tubulin tyrosine ligase-like family, member 7.
      
 0.455
mysm1
Histone H2A deubiquitinase MYSM1.
    
  0.442
LOC101061845
NME/NM23 family member 8; Belongs to the NDK family.
    
 0.417
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.