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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wdr48WD repeat domain 48b. (585 aa)    
Predicted Functional Partners:
usp1
Ubiquitin carboxyl-terminal hydrolase.
   
 0.999
fanci
FA complementation group I.
    
 0.969
usp12
Ubiquitin specific peptidase 12a; Belongs to the peptidase C19 family.
   
 0.935
LOC101071205
Ubiquitin specific peptidase 12b; Belongs to the peptidase C19 family.
   
 0.935
usp46
Ubiquitin specific peptidase 46; Belongs to the peptidase C19 family.
   
 0.935
LOC101077945
DM1 locus, WD repeat containing.
    
 0.932
wdr20
WD repeat domain 20a.
    
 0.932
LOC101068631
WD repeat domain 20b.
    
 0.911
rps27a
Ribosomal protein S27a.
    
 0.909
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.902
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.