STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
wdr48WD repeat domain 48b. (585 aa)    
Predicted Functional Partners:
usp1
Ubiquitin carboxyl-terminal hydrolase.
    
 0.999
fanci
FA complementation group I.
    
 0.982
H2U2H7_TAKRU
Uncharacterized protein.
   
 0.962
LOC101077945
DM1 locus, WD repeat containing.
    
 0.961
wdr20
WD repeat domain 20a.
    
 0.961
usp12
Ubiquitin specific peptidase 12a; Belongs to the peptidase C19 family.
    
 0.953
LOC101071205
Ubiquitin specific peptidase 12b; Belongs to the peptidase C19 family.
    
 0.942
usp46
Ubiquitin specific peptidase 46; Belongs to the peptidase C19 family.
    
 0.942
LOC101068631
WD repeat domain 20b.
    
 0.928
rps27a
Ribosomal protein S27a.
    
 0.852
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.