Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
topbp1DNA topoisomerase II binding protein 1. (1496 aa)    
Predicted Functional Partners:
rhno1
Si:ch73-352p4.5.
    
 0.996
atrip
Uncharacterized protein.
    
 0.995
ticrr
Treslin_N domain-containing protein.
    
 
 0.994
brip1
BRCA1 interacting protein C-terminal helicase 1.
   
 0.994
brca1
Uncharacterized protein.
   
 0.993
atr
ATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family.
    
 0.991
CLSPN
Claspin.
   
 0.990
bard1
BRCA1 associated RING domain 1.
   
 0.989
chek1
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.974
LOC101079595
Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family.
    
 0.973
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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