psmc4 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

psmc4

Proteasome 26S subunit, ATPase 4; Belongs to the AAA ATPase family. (417 aa)

Predicted Functional Partners:

psma5

0.999

psmc3

0.999

psmd6

0.999

psmd8

0.999

psmd14

0.999

psmd7

0.999

psmb2

0.999

psmb3

0.999

psmc6

0.999

LOC101068229

0.999

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101068229	psma5	ENSTRUP00000061777	ENSTRUP00000004433	Proteasome 26S subunit, non-ATPase 3.	Proteasome subunit alpha type.	0.996
LOC101068229	psmb2	ENSTRUP00000061777	ENSTRUP00000057104	Proteasome 26S subunit, non-ATPase 3.	Proteasome subunit beta.	0.995
LOC101068229	psmb3	ENSTRUP00000061777	ENSTRUP00000058628	Proteasome 26S subunit, non-ATPase 3.	Proteasome subunit beta.	0.995
LOC101068229	psmc3	ENSTRUP00000061777	ENSTRUP00000018255	Proteasome 26S subunit, non-ATPase 3.	Proteasome 26S subunit, ATPase 3; Belongs to the AAA ATPase family.	0.999
LOC101068229	psmc4	ENSTRUP00000061777	ENSTRUP00000016152	Proteasome 26S subunit, non-ATPase 3.	Proteasome 26S subunit, ATPase 4; Belongs to the AAA ATPase family.	0.999
LOC101068229	psmc6	ENSTRUP00000061777	ENSTRUP00000060302	Proteasome 26S subunit, non-ATPase 3.	Proteasome 26S subunit, ATPase 6; Belongs to the AAA ATPase family.	0.997
LOC101068229	psmd14	ENSTRUP00000061777	ENSTRUP00000043942	Proteasome 26S subunit, non-ATPase 3.	Proteasome 26S subunit, non-ATPase 14.	0.999
LOC101068229	psmd6	ENSTRUP00000061777	ENSTRUP00000023419	Proteasome 26S subunit, non-ATPase 3.	Proteasome 26S subunit, non-ATPase 6.	0.999
LOC101068229	psmd7	ENSTRUP00000061777	ENSTRUP00000055135	Proteasome 26S subunit, non-ATPase 3.	Proteasome 26S subunit, non-ATPase 7.	0.999
LOC101068229	psmd8	ENSTRUP00000061777	ENSTRUP00000025865	Proteasome 26S subunit, non-ATPase 3.	Proteasome 26S subunit, non-ATPase 8.	0.998
psma5	LOC101068229	ENSTRUP00000004433	ENSTRUP00000061777	Proteasome subunit alpha type.	Proteasome 26S subunit, non-ATPase 3.	0.996
psma5	psmb2	ENSTRUP00000004433	ENSTRUP00000057104	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
psma5	psmb3	ENSTRUP00000004433	ENSTRUP00000058628	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
psma5	psmc3	ENSTRUP00000004433	ENSTRUP00000018255	Proteasome subunit alpha type.	Proteasome 26S subunit, ATPase 3; Belongs to the AAA ATPase family.	0.997
psma5	psmc4	ENSTRUP00000004433	ENSTRUP00000016152	Proteasome subunit alpha type.	Proteasome 26S subunit, ATPase 4; Belongs to the AAA ATPase family.	0.999
psma5	psmc6	ENSTRUP00000004433	ENSTRUP00000060302	Proteasome subunit alpha type.	Proteasome 26S subunit, ATPase 6; Belongs to the AAA ATPase family.	0.998
psma5	psmd14	ENSTRUP00000004433	ENSTRUP00000043942	Proteasome subunit alpha type.	Proteasome 26S subunit, non-ATPase 14.	0.999
psma5	psmd6	ENSTRUP00000004433	ENSTRUP00000023419	Proteasome subunit alpha type.	Proteasome 26S subunit, non-ATPase 6.	0.998
psma5	psmd7	ENSTRUP00000004433	ENSTRUP00000055135	Proteasome subunit alpha type.	Proteasome 26S subunit, non-ATPase 7.	0.998
psma5	psmd8	ENSTRUP00000004433	ENSTRUP00000025865	Proteasome subunit alpha type.	Proteasome 26S subunit, non-ATPase 8.	0.997