Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101063161Deoxyribonuclease II beta. (348 aa)    
Predicted Functional Partners:
LOC105419671
Uncharacterized protein.
  
  
 
0.911
LOC101073292
Deoxyribonuclease II, lysosomal.
  
  
 
0.906
ctsz
Cathepsin Z; Belongs to the peptidase C1 family.
   
 
 0.683
ENSTRUP00000066846
annotation not available
   
 
 0.683
gns
N-acetylglucosamine-6-sulfatase; Belongs to the sulfatase family.
   
 0.665
LOC101067840
N-acetylglucosamine-6-sulfatase; Belongs to the sulfatase family.
   
 0.665
bloc1s1
Biogenesis of lysosomal organelles complex-1, subunit 1.
   
 
  0.580
LOC101071071
Vesicle-associated membrane protein 8 (endobrevin).
     
 0.573
m6pr
Uncharacterized protein.
     
  0.555
LOC101070919
Cathepsin Bb; Belongs to the peptidase C1 family.
   
 
 0.546
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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