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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB38RAB38, member RAS oncogene family. (217 aa)    
Predicted Functional Partners:
dct
Dopachrome tautomerase.
   
  
 0.636
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6.
    
 
 0.614
rabggta
Rab geranylgeranyltransferase subunit alpha.
    
 0.611
chm
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
    
 0.604
ankrd27
Ankyrin repeat domain 27 (VPS9 domain).
    
 
 0.594
tyrp1
Tyrosinase related protein 1.
   
  
 0.553
hps1
HPS1 biogenesis of lysosomal organelles complex 3 subunit 1.
     
 0.530
ptar1
Protein prenyltransferase alpha subunit repeat containing 1.
    
 0.528
grm5
Glutamate receptor, metabotropic 5b.
 
    
 0.500
hps4
HPS4 biogenesis of lysosomal organelles complex 3 subunit 2.
     
 0.497
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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