Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RAB38RAB38, member RAS oncogene family. (217 aa)    
Predicted Functional Partners:
chm
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
    
 0.725
rabggta
Rab geranylgeranyltransferase subunit alpha.
    
 0.681
ankrd27
Ankyrin repeat domain 27 (VPS9 domain).
    
 
 0.635
dct
Dopachrome tautomerase.
      
 0.620
hps4
HPS4 biogenesis of lysosomal organelles complex 3 subunit 2.
    
 0.569
tyrp1
Tyrosinase related protein 1.
      
 0.525
hps1
HPS1 biogenesis of lysosomal organelles complex 3 subunit 1.
    
 0.515
grm5
Glutamate receptor, metabotropic 5b.
      
 0.511
ptar1
Protein prenyltransferase alpha subunit repeat containing 1.
    
 0.507
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6.
    
 
 0.502
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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