Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
snx30Sorting nexin family member 30. (438 aa)    
Predicted Functional Partners:
bloc1s2
Biogenesis of lysosomal organelles complex-1, subunit 2.
    
 
 0.784
LOC101074551
Sorting nexin 4.
   
 
 0.782
LOC101063817
PX domain-containing protein.
   
 
 0.782
LOC101078809
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.731
LOC101078809-2
VPS35 retromer complex component.
   
 
 0.731
vps29
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
   
 
 0.709
snx5
Sorting nexin; Involved in several stages of intracellular trafficking.
   
 0.689
snx6
Sorting nexin; Involved in several stages of intracellular trafficking.
   
 0.689
LOC101075403
Si:dkey-28n18.9.
   
 0.641
LOC101069563
V-SNARE coiled-coil homology domain-containing protein.
    
 0.638
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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