Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC101075527DIX domain containing 1a. (464 aa)    
Predicted Functional Partners:
LOC101077024
NUDE_C domain-containing protein.
    
 
 0.650
ndel1
NudE neurodevelopment protein 1-like 1b.
    
 
 0.650
LOC101078512
NudE neurodevelopment protein 1-like 1a.
    
 
 0.650
NDE1
NudE neurodevelopment protein 1.
    
 
 0.650
cdk13
Cyclin-dependent kinase 13.
    
 
 0.533
cdk12
Cyclin-dependent kinase 12 isoform X1.
    
 
 0.533
usp1
Ubiquitin carboxyl-terminal hydrolase.
   
  
 0.479
coq4
Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial; Component of the coenzyme Q biosynthetic pathway. May play a role in organizing a multi-subunit COQ enzyme complex required for coenzyme Q biosynthesis. Required for steady-state levels of other COQ polypeptides; Belongs to the COQ4 family.
      
 0.445
dlat
Acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
      
 0.431
alyref
RRM domain-containing protein.
   
   0.415
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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