STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
wdr78WD repeat domain 78. (532 aa)    
Predicted Functional Partners:
H2S7P3_TAKRU
Dynein, axonemal, heavy chain 5.
  
 0.840
LOC101061077
Tctex1 domain containing 1.
    
 0.799
dctn2
Dynactin 2 (p50).
    
 0.764
LOC101061845
NME/NM23 family member 8; Belongs to the NDK family.
    
 
 0.741
H2TXK8_TAKRU
NYD-SP28 domain-containing protein.
   
 0.714
LOC101074513
EF-hand domain (C-terminal) containing 1.
  
 
 0.712
Dnah3
Uncharacterized protein.
  
 0.693
ENSTRUP00000057600
Uncharacterized protein.
  
 0.680
DYNLRB1
Dynein light chain roadblock.
   
 0.664
dynlrb2
Dynein light chain roadblock-type 2.
   
 0.664
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.