Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101072980Anterior gradient 1. (163 aa)    
Predicted Functional Partners:
agr2
Anterior gradient 2.
   
    0.938
LOC101062661
Zona pellucida-like domain containing 1a.
      
 0.720
tmx1
Thioredoxin-related transmembrane protein 1.
      
 0.604
erp44
Endoplasmic reticulum protein 44.
      
 0.514
pdia5
Protein disulfide isomerase family A, member 5.
      
 0.510
LOC101063856
NADPH oxidase organizer 1b.
      
 0.488
noxo1
NADPH oxidase organizer 1a.
      
 0.488
LOC101066074
Thioredoxin domain-containing protein.
      
 0.478
TMX3
Thioredoxin related transmembrane protein 3.
      
 0.478
cib3
Calcium and integrin binding family member 3.
      
 0.456
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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