Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
c6h5orf30Zgc:194281. (202 aa)    
Predicted Functional Partners:
Avpi1
TC1 domain-containing protein.
    
   0.919
LOC101076198
Unc-119 lipid binding chaperone.
    
   0.865
LOC101063149
Unc-119 lipid binding chaperone.
    
   0.865
lrrc57
Leucine rich repeat containing 57.
    
   0.857
LOC101071401
SAM pointed domain containing ETS transcription factor.
    
   0.786
SPDEF
SAM pointed domain containing ETS transcription factor.
    
   0.786
trmt11
UPF0020 domain-containing protein.
      
 0.545
LOC101063823
GMP_PDE_delta domain-containing protein.
    
   0.519
unc119b
Unc-119 homolog 1.
    
   0.519
LOC101072031
Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase.
      
 0.480
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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