LOC101077404 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101077404

Uncharacterized protein. (815 aa)

Predicted Functional Partners:

tent4a

0.903

tent4b

0.902

ENSTRUP00000086221

0.774

mtrex

0.726

exosc10

0.701

ENSTRUP00000067777

0.683

zcchc7

0.683

scaf4

0.654

cnot9

0.637

skiv2l

0.575

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000067777	LOC101077404	ENSTRUP00000067777	ENSTRUP00000016462	annotation not available	Uncharacterized protein.	0.683
ENSTRUP00000067777	exosc10	ENSTRUP00000067777	ENSTRUP00000031620	annotation not available	Exosome component 10.	0.567
ENSTRUP00000067777	mtrex	ENSTRUP00000067777	ENSTRUP00000050676	annotation not available	Mtr4 exosome RNA helicase.	0.876
ENSTRUP00000067777	scaf4	ENSTRUP00000067777	ENSTRUP00000051003	annotation not available	SR-related CTD-associated factor 4a.	0.572
ENSTRUP00000067777	skiv2l	ENSTRUP00000067777	ENSTRUP00000058585	annotation not available	SKI2 homolog, superkiller viralicidic activity 2-like.	0.634
ENSTRUP00000067777	tent4a	ENSTRUP00000067777	ENSTRUP00000030617	annotation not available	Terminal nucleotidyltransferase 4A.	0.683
ENSTRUP00000067777	tent4b	ENSTRUP00000067777	ENSTRUP00000017091	annotation not available	Terminal nucleotidyltransferase 4B.	0.683
ENSTRUP00000086221	LOC101077404	ENSTRUP00000086221	ENSTRUP00000016462	annotation not available	Uncharacterized protein.	0.774
ENSTRUP00000086221	mtrex	ENSTRUP00000086221	ENSTRUP00000050676	annotation not available	Mtr4 exosome RNA helicase.	0.677
ENSTRUP00000086221	skiv2l	ENSTRUP00000086221	ENSTRUP00000058585	annotation not available	SKI2 homolog, superkiller viralicidic activity 2-like.	0.473
ENSTRUP00000086221	tent4a	ENSTRUP00000086221	ENSTRUP00000030617	annotation not available	Terminal nucleotidyltransferase 4A.	0.774
ENSTRUP00000086221	tent4b	ENSTRUP00000086221	ENSTRUP00000017091	annotation not available	Terminal nucleotidyltransferase 4B.	0.774
LOC101077404	ENSTRUP00000067777	ENSTRUP00000016462	ENSTRUP00000067777	Uncharacterized protein.	annotation not available	0.683
LOC101077404	ENSTRUP00000086221	ENSTRUP00000016462	ENSTRUP00000086221	Uncharacterized protein.	annotation not available	0.774
LOC101077404	cnot9	ENSTRUP00000016462	ENSTRUP00000017471	Uncharacterized protein.	CCR4-NOT transcription complex subunit 9.	0.637
LOC101077404	exosc10	ENSTRUP00000016462	ENSTRUP00000031620	Uncharacterized protein.	Exosome component 10.	0.701
LOC101077404	mtrex	ENSTRUP00000016462	ENSTRUP00000050676	Uncharacterized protein.	Mtr4 exosome RNA helicase.	0.726
LOC101077404	scaf4	ENSTRUP00000016462	ENSTRUP00000051003	Uncharacterized protein.	SR-related CTD-associated factor 4a.	0.654
LOC101077404	skiv2l	ENSTRUP00000016462	ENSTRUP00000058585	Uncharacterized protein.	SKI2 homolog, superkiller viralicidic activity 2-like.	0.575
LOC101077404	tent4a	ENSTRUP00000016462	ENSTRUP00000030617	Uncharacterized protein.	Terminal nucleotidyltransferase 4A.	0.903