Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ice1Uncharacterized protein. (233 aa)    
Predicted Functional Partners:
ice2
Interactor of little elongator complex ELL subunit 2.
   
 0.932
eaf1
ELL associated factor 1.
    
 
 0.868
ell2
Elongation factor, RNA polymerase II, 2.
    
 0.679
ell
Elongation factor RNA polymerase II.
    
 0.679
LOC101072365
Uncharacterized protein.
    
 0.679
LOC101080126
Si:ch211-13k12.2.
    
 0.679
ENSTRUP00000069471
RNA polymerase II associated protein 2.
     
 0.626
eaf2
ELL associated factor 2.
    
   0.624
zc3h4
Zinc finger CCCH-type containing 4.
   
 
 0.554
zc3h6
Zinc finger CCCH-type containing 6.
   
 
 0.554
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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