Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC105416829Family with sequence similarity 113. (348 aa)    
Predicted Functional Partners:
snx13
Sorting nexin 13.
      
 0.846
LOC101069841
Uncharacterized protein.
      
 0.701
vps16
Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.
      
 0.665
rpp25l
Ribonuclease P/MRP 25 subunit-like.
      
 0.654
rer1
Protein RER1; Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.
      
 0.654
rnf24
Ring finger protein 24.
      
 0.646
ptpra
Protein tyrosine phosphatase receptor type A.
      
 0.638
LOC101061147
C1q domain-containing protein.
      
 0.626
ENSTRUP00000074525
Uncharacterized protein LOC105418761 isoform X1.
      
 0.600
LOC115252008
PiggyBac transposable element-derived protein 3-like.
      
 0.600
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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