Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC101070521Dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A, b. (775 aa)    
Predicted Functional Partners:
DCAF7
DDB1 and CUL4 associated factor 7.
   
 
 0.964
lin52
Lin-52 DREAM MuvB core complex component.
    
 0.930
rnf169
Ring finger protein 169.
   
 
 0.921
LOC101073984
CREB binding protein a.
   
 0.858
ENSTRUP00000048396
DUF4585 domain-containing protein.
    
 
 0.854
fnta
Farnesyltransferase, CAAX box, alpha.
    
   0.851
rad54l2
RAD54 like 2.
    
 
 0.835
LOC101070879
Uncharacterized protein.
    
 
 0.835
LOC101070643
E1A binding protein p300 a.
   
 0.792
ENSTRUP00000064066
E1A binding protein p300 b.
   
 0.792
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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