Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
fam168bFamily with sequence similarity 168 member B. (202 aa)    
Predicted Functional Partners:
c2cd5
C2 calcium dependent domain containing 5.
      
 0.641
ndufaf8
NADH:ubiquinone oxidoreductase complex assembly factor 8.
      
 0.634
cope
Coatomer subunit epsilon; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Belongs to the COPE family.
      
 0.630
nfu1
Nfu_N domain-containing protein.
      
 0.620
golga4
Golgin A4.
      
 0.617
tada2a
Transcriptional adapter.
      
 0.612
casc3
Casc3 exon junction complex subunit.
   
  
 0.562
ENSTRUP00000080159
annotation not available
   
  
 0.562
cmtm4
CKLF-like MARVEL transmembrane domain containing 4.
      
 0.551
PTPN14
Tyrosine-protein phosphatase non-receptor type 14 isoform X1.
      
 0.545
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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