Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
synmSynemin, intermediate filament protein; Belongs to the intermediate filament family. (969 aa)    
Predicted Functional Partners:
LOC101072320
Glial fibrillary acidic protein; Belongs to the intermediate filament family.
   
 
 0.763
rbpms2
RNA binding protein, mRNA processing factor 2b.
    
 0.730
Sync
Uncharacterized protein.
   
 0.633
LOC105417150
E3 ubiquitin-protein ligase BRE1A-like.
   
 0.633
kank2
KN motif and ankyrin repeat domains 2.
   
 0.628
BFSP1
Beaded filament structural protein 1.
    
 
 0.583
grb2
Growth factor receptor-bound protein 2b.
    
  0.581
LOC101061204
Uncharacterized protein.
    
  0.581
LOC101074660
Cardiomyopathy associated 5.
    
 0.569
H2RR55_TAKRU
BAR domain-containing protein.
    
   0.552
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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