STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
synmSynemin, intermediate filament protein; Belongs to the intermediate filament family. (969 aa)    
Predicted Functional Partners:
H2SH83_TAKRU
IF rod domain-containing protein; Belongs to the intermediate filament family.
  
 
0.645
LOC101077614
TPR_REGION domain-containing protein.
    
 0.586
tep1
Telomerase protein component 1.
   
 0.533
LOC101074738
Retinoblastoma binding protein 5.
    
 0.506
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.503
LOC101078029
Uncharacterized protein.
    
 0.493
LOC101065748
Lysine (K)-specific demethylase 6B, a.
    
 0.493
kdm6a
Lysine (K)-specific demethylase 6A, like.
    
 0.493
vcl
Vinculin b.
     
 0.489
LOC101071113
Vinculin a.
     
 0.489
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.