STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101078875Diencephalon/mesencephalon homeobox 1a. (387 aa)    
Predicted Functional Partners:
LOC101078309
Iroquois homeobox 4a.
    
 
 0.503
themis2
Thymocyte selection associated family member 2.
      
 0.471
TMEM43
Uncharacterized protein.
      
 0.471
ripk1
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
    
 
 0.470
bahd1
Bromo adjacent homology domain containing 1.
      
 0.468
nfkbid
ANK_REP_REGION domain-containing protein.
      
 0.468
cryba4
Crystallin, beta A4; Belongs to the beta/gamma-crystallin family.
      
 0.468
Glrx3
Glutaredoxin 3.
      
 0.468
fbxl5
F-box and leucine-rich repeat protein 5.
      
 0.467
trim59
Tripartite motif containing 59.
    
 0.453
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.