Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fam234bFamily with sequence similarity 234 member B. (680 aa)    
Predicted Functional Partners:
LOC101064070
Actin binding Rho activating protein a.
      
 0.737
tm9sf2
Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.
      
 0.724
LOC101063965
Golgi glycoprotein 1b.
      
 0.605
LOC101075456
Golgi glycoprotein 1a.
      
 0.605
LOC101062195
Myosin XVIIIAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
      
 0.540
PRELID3B
PRELI domain containing 3B.
      
 0.519
smdt1
Single-pass membrane protein with aspartate-rich tail 1a.
      
 0.518
nedd9
Neural precursor cell expressed, developmentally down-regulated 9.
      
 0.518
smdt1-2
Single-pass membrane protein with aspartate-rich tail 1b.
      
 0.518
lnx1
Ligand of numb-protein X 1.
      
 0.509
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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