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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sgsm3Small G protein signaling modulator 3. (792 aa)    
Predicted Functional Partners:
otud3
OTU deubiquitinase 3.
      
 0.566
polr2g
Polymerase (RNA) II (DNA directed) polypeptide G-like.
 
    
 0.496
pelo
Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs.
   
  
 0.452
TBC1D13
TBC1 domain family member 13.
      
 0.404
tbc1d23
TBC1 domain family, member 23.
      
 0.404
polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
      
 0.403
ufsp1
UFM1-specific peptidase 1 (non-functional).
      
 0.402
poldip3
Polymerase (DNA-directed), delta interacting protein 3.
      
 0.402
dennd5a
DENN/MADD domain containing 5A.
      
 0.402
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.