Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tent4bTerminal nucleotidyltransferase 4B. (673 aa)    
Predicted Functional Partners:
zcchc7
Zinc finger, CCHC domain containing 7.
   
 0.906
LOC101077404
Uncharacterized protein.
  
  
 
0.902
tent4a
Terminal nucleotidyltransferase 4A.
  
  
 
0.901
ENSTRUP00000086221
annotation not available
   
 0.833
exosc10
Exosome component 10.
   
 0.825
mtrex
Mtr4 exosome RNA helicase.
   
 0.807
ENSTRUP00000067777
annotation not available
   
 0.804
PAPOLG
Poly(A) polymerase gamma.
    
 
 0.757
tut1
Terminal uridylyl transferase 1, U6 snRNA-specific.
   
  
 0.704
znfx1
Zinc finger, NFX1-type containing 1.
    
 
 0.685
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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