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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tspan8Tetraspanin. (236 aa)    
Predicted Functional Partners:
zfc3h1
zf-C3H1 domain-containing protein.
      
 0.707
LOC101065208
Usher syndrome 1C.
   
 0.657
ptprc
Uncharacterized protein.
    
 0.638
sergef
Secretion regulating guanine nucleotide exchange factor.
      
 0.623
tbc1d15
TBC1 domain family, member 15.
      
 0.611
CPNE8
Copine 8.
      
 0.610
LOC101065210
Copine VIII.
      
 0.610
ptgfrn
Uncharacterized protein.
    
 
 0.558
LOC101064546
AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.
    
 
 0.557
rtn4ip1
Reticulon 4 interacting protein 1.
      
 0.547
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.