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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alkbh8AlkB homolog 8, tRNA methyltransferase. (708 aa)    
Predicted Functional Partners:
trmt112
tRNA methyltransferase subunit 11-2.
   
 
 0.767
fto
FTO alpha-ketoglutarate dependent dioxygenase.
     
 0.716
alkbh7
AlkB homolog 7.
      
 0.588
alkbh1
AlkB homolog 1, histone H2A dioxygenase.
      
 0.584
bud23
BUD23 rRNA methyltransferase and ribosome maturation factor.
   
  
 0.570
LOC101066140
BAALC binder of MAP3K1 and KLF4 b.
      
 0.566
adat3
Adenosine deaminase tRNA specific 3.
      
 0.566
alkbh2
AlkB homolog 2, alpha-ketoglutarate-dependent dioxygenase.
      
 0.566
ctu1
Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position.
      
 0.546
nhej1
Nonhomologous end-joining factor 1.
      
 0.544
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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