Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ubr7Uncharacterized protein. (437 aa)    
Predicted Functional Partners:
Casp8ap2
Uncharacterized protein.
      
 0.569
LOC101076853
Si:ch211-113e8.10.
      
 0.554
LOC101067501
Nuclear autoantigenic sperm protein (histone-binding).
   
 
 0.528
NASP
TPR_REGION domain-containing protein.
   
 
 0.528
prim1
DNA primase; Belongs to the eukaryotic-type primase small subunit family.
   
  
 0.520
chaf1b
Chromatin assembly factor 1, subunit B.
      
 0.512
ubr3
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
      
 0.482
LOC101068455
Nuclear envelope integral membrane protein 1.
      
 0.457
dcaf15
DDB1 and CUL4 associated factor 15.
      
 0.426
gins2
DNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family.
   
  
 0.426
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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