Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101069459Uncharacterized protein. (1109 aa)    
Predicted Functional Partners:
LOC101077791
Uncharacterized protein.
   
 0.727
itsn1
Intersectin 1 (SH3 domain protein).
   
 0.594
LOC101073733
Uncharacterized protein.
    
 0.537
LOC101067723
Cell division cycle 42.
    
 0.537
nckipsd
NCK interacting protein with SH3 domain.
    
 
 0.528
atad2b
ATPase family AAA domain containing 2B.
   
  
 0.526
LOC101074558
DEAD (Asp-Glu-Ala-Asp) box polypeptide 43; Belongs to the DEAD box helicase family.
   
  
 0.516
LOC101075302
Ras homolog family member F.
    
 0.507
LOC101076389
F-BAR domain-containing protein.
    
 0.495
gas7
Growth arrest-specific 7a.
    
 0.495
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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