Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101072270General transcription factor IIIAa. (359 aa)    
Predicted Functional Partners:
gtf3c1
B-block_TFIIIC domain-containing protein.
    
 0.890
bdp1
SANT domain-containing protein.
    
 0.819
LOC101066443
BRF1 RNA polymerase III transcription initiation factor subunit b.
   
 0.789
LOC101067672
TFIIB-type domain-containing protein.
   
 0.789
gtf3c3
General transcription factor IIIC, polypeptide 3.
    
 0.764
polr2l
Polymerase (RNA) II (DNA directed) polypeptide L.
    
 0.720
polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
   
 0.714
abhd10
Transgelin 3b.
   
 
 0.701
gsx1
Homeobox protein GSH.
    
 
 0.697
GTF3C5
Uncharacterized protein.
    
 0.688
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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