LOC101069808 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101069808

LsmAD domain-containing protein. (1046 aa)

Predicted Functional Partners:

nufip2

0.976

lsm12

0.972

ddx6

0.924

LOC101070680

0.924

g3bp2

0.840

G3bp1

0.840

atxn2

0.823

ENSTRUP00000065637

0.821

ENSTRUP00000069972

0.821

fam98a

0.821

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000065637	ENSTRUP00000069972	ENSTRUP00000065637	ENSTRUP00000069972	Protein FAM98A.	annotation not available	0.544
ENSTRUP00000065637	G3bp1	ENSTRUP00000065637	ENSTRUP00000064808	Protein FAM98A.	GTPase activating protein (SH3 domain) binding protein 1.	0.597
ENSTRUP00000065637	LOC101069808	ENSTRUP00000065637	ENSTRUP00000017523	Protein FAM98A.	LsmAD domain-containing protein.	0.821
ENSTRUP00000065637	atxn2	ENSTRUP00000065637	ENSTRUP00000043038	Protein FAM98A.	Ataxin 2.	0.782
ENSTRUP00000065637	fam98a	ENSTRUP00000065637	ENSTRUP00000072997	Protein FAM98A.	Uncharacterized protein.	0.542
ENSTRUP00000065637	g3bp2	ENSTRUP00000065637	ENSTRUP00000028810	Protein FAM98A.	Zgc:56304.	0.597
ENSTRUP00000065637	lsm12	ENSTRUP00000065637	ENSTRUP00000017503	Protein FAM98A.	LSM12 homolog b.	0.540
ENSTRUP00000065637	nufip2	ENSTRUP00000065637	ENSTRUP00000029639	Protein FAM98A.	Uncharacterized protein.	0.818
ENSTRUP00000069972	ENSTRUP00000065637	ENSTRUP00000069972	ENSTRUP00000065637	annotation not available	Protein FAM98A.	0.544
ENSTRUP00000069972	G3bp1	ENSTRUP00000069972	ENSTRUP00000064808	annotation not available	GTPase activating protein (SH3 domain) binding protein 1.	0.597
ENSTRUP00000069972	LOC101069808	ENSTRUP00000069972	ENSTRUP00000017523	annotation not available	LsmAD domain-containing protein.	0.821
ENSTRUP00000069972	atxn2	ENSTRUP00000069972	ENSTRUP00000043038	annotation not available	Ataxin 2.	0.782
ENSTRUP00000069972	fam98a	ENSTRUP00000069972	ENSTRUP00000072997	annotation not available	Uncharacterized protein.	0.544
ENSTRUP00000069972	g3bp2	ENSTRUP00000069972	ENSTRUP00000028810	annotation not available	Zgc:56304.	0.597
ENSTRUP00000069972	lsm12	ENSTRUP00000069972	ENSTRUP00000017503	annotation not available	LSM12 homolog b.	0.540
ENSTRUP00000069972	nufip2	ENSTRUP00000069972	ENSTRUP00000029639	annotation not available	Uncharacterized protein.	0.818
G3bp1	ENSTRUP00000065637	ENSTRUP00000064808	ENSTRUP00000065637	GTPase activating protein (SH3 domain) binding protein 1.	Protein FAM98A.	0.597
G3bp1	ENSTRUP00000069972	ENSTRUP00000064808	ENSTRUP00000069972	GTPase activating protein (SH3 domain) binding protein 1.	annotation not available	0.597
G3bp1	LOC101069808	ENSTRUP00000064808	ENSTRUP00000017523	GTPase activating protein (SH3 domain) binding protein 1.	LsmAD domain-containing protein.	0.840
G3bp1	LOC101070680	ENSTRUP00000064808	ENSTRUP00000056299	GTPase activating protein (SH3 domain) binding protein 1.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.752