Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
sarsSeryl-tRNA synthetase. (542 aa)    
Predicted Functional Partners:
PSTK
Phosphoseryl-tRNA kinase.
     
 0.988
LOC101065111
Methyltransferase-like protein; Belongs to the methyltransferase superfamily. METL family.
    
 
 0.954
yars1
Tyrosine--tRNA ligase.
  
  
 0.946
sars2
Seryl-tRNA synthetase 2, mitochondrial.
  
  
 
0.907
rheb
Ras homolog, mTORC1 binding.
 
   
  0.876
eprs1
Glutamyl-prolyl-tRNA synthetase.
  
 
 0.869
WARS
Tryptophanyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.869
supt20h
SPT20 homolog, SAGA complex component.
    
 
 0.865
taf10
Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.
   
 
 0.864
supt3h
SPT3 homolog, SAGA and STAGA complex component.
    
 
 0.861
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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