Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101068243Zgc:112083. (506 aa)    
Predicted Functional Partners:
LOC101079296
LisH domain-containing protein.
    
 
 0.901
LOC101062944
Homeobox domain-containing protein.
    
   0.699
LOC101067138
Goosecoid.
    
   0.699
LOC101072911
Sidekick cell adhesion molecule 2a.
      
 0.695
dctn2
Dynactin 2 (p50).
      
 0.695
SDK1
Sidekick cell adhesion molecule 1.
      
 0.695
LSM10
LSM10, U7 small nuclear RNA associated.
      
 0.586
ndufab1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
   0.573
fev
ETS domain-containing protein.
      
 0.518
e2f7
E2F transcription factor 7.
      
 0.514
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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