STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101068243Zgc:112083. (506 aa)    
Predicted Functional Partners:
LOC101062944
Homeobox domain-containing protein.
    
   0.705
LOC101067138
Goosecoid.
    
   0.705
taf8
TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
    0.581
LOC101079296
LisH domain-containing protein.
    
 
 0.577
lrrc57
Leucine rich repeat containing 57.
   
    0.576
LSM10
LSM10, U7 small nuclear RNA associated.
      
 0.565
dctn2
Dynactin 2 (p50).
      
 0.509
LOC101077246
H6 family homeobox 3a.
    
   0.483
LOC101079043
H6 family homeobox 3.
    
   0.483
LOC101064633
Homeobox domain-containing protein.
    
   0.483
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.