tbp protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tbp

TATA box binding protein. (301 aa)

Predicted Functional Partners:

gtf2b

0.972

taf1

0.971

taf6

0.971

taf9

0.970

taf7l

0.970

taf10

0.970

taf2

0.970

bdp1

0.969

polr2a

0.969

gtf2e1

0.968

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
bdp1	gtf2b	ENSTRUP00000054422	ENSTRUP00000055433	SANT domain-containing protein.	General transcription factor IIB.	0.563
bdp1	tbp	ENSTRUP00000054422	ENSTRUP00000017711	SANT domain-containing protein.	TATA box binding protein.	0.969
gtf2b	bdp1	ENSTRUP00000055433	ENSTRUP00000054422	General transcription factor IIB.	SANT domain-containing protein.	0.563
gtf2b	gtf2e1	ENSTRUP00000055433	ENSTRUP00000019189	General transcription factor IIB.	General transcription factor IIE, polypeptide 1, alpha.	0.989
gtf2b	polr2a	ENSTRUP00000055433	ENSTRUP00000087210	General transcription factor IIB.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.995
gtf2b	taf1	ENSTRUP00000055433	ENSTRUP00000039888	General transcription factor IIB.	Transcription initiation factor TFIID subunit.	0.980
gtf2b	taf10	ENSTRUP00000055433	ENSTRUP00000039300	General transcription factor IIB.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.969
gtf2b	taf2	ENSTRUP00000055433	ENSTRUP00000059494	General transcription factor IIB.	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.941
gtf2b	taf6	ENSTRUP00000055433	ENSTRUP00000060692	General transcription factor IIB.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.925
gtf2b	taf7l	ENSTRUP00000055433	ENSTRUP00000007157	General transcription factor IIB.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.933
gtf2b	taf9	ENSTRUP00000055433	ENSTRUP00000002470	General transcription factor IIB.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.975
gtf2b	tbp	ENSTRUP00000055433	ENSTRUP00000017711	General transcription factor IIB.	TATA box binding protein.	0.972
gtf2e1	gtf2b	ENSTRUP00000019189	ENSTRUP00000055433	General transcription factor IIE, polypeptide 1, alpha.	General transcription factor IIB.	0.989
gtf2e1	polr2a	ENSTRUP00000019189	ENSTRUP00000087210	General transcription factor IIE, polypeptide 1, alpha.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996
gtf2e1	taf1	ENSTRUP00000019189	ENSTRUP00000039888	General transcription factor IIE, polypeptide 1, alpha.	Transcription initiation factor TFIID subunit.	0.846
gtf2e1	taf10	ENSTRUP00000019189	ENSTRUP00000039300	General transcription factor IIE, polypeptide 1, alpha.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.837
gtf2e1	taf2	ENSTRUP00000019189	ENSTRUP00000059494	General transcription factor IIE, polypeptide 1, alpha.	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.867
gtf2e1	taf6	ENSTRUP00000019189	ENSTRUP00000060692	General transcription factor IIE, polypeptide 1, alpha.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.942
gtf2e1	taf7l	ENSTRUP00000019189	ENSTRUP00000007157	General transcription factor IIE, polypeptide 1, alpha.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.912
gtf2e1	taf9	ENSTRUP00000019189	ENSTRUP00000002470	General transcription factor IIE, polypeptide 1, alpha.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.854