STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101076133CCR4-NOT transcription complex, subunit 3b. (1009 aa)    
Predicted Functional Partners:
cnot9
CCR4-NOT transcription complex subunit 9.
    
 0.980
cnot4
CCR4-NOT transcription complex, subunit 4a.
   
 0.968
cnot2
CCR4-NOT transcription complex, subunit 2.
    
0.944
LOC101069703
NOT2_3_5 domain-containing protein.
    
0.944
cnot11
CCR4-NOT transcription complex, subunit 11.
    
 0.931
cnot8
CCR4-NOT transcription complex, subunit 8.
    
 0.928
LOC101064780
CCR4-NOT transcription complex, subunit 7.
    
 0.928
cnot10
CCR4-NOT transcription complex, subunit 10.
   
 0.904
patl1
PAT1 homolog 1, processing body mRNA decay factor.
   
 
 0.786
patl2
PAT1 homolog 2.
   
 
 0.786
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.