Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC101061451Rho/rac guanine nucleotide exchange factor (GEF) 18a. (982 aa)    
Predicted Functional Partners:
LOC101076147
Uncharacterized protein.
   
 0.945
LOC101070117
Ras homolog gene family, member Aa.
   
 0.945
LOC101064166
Uncharacterized protein.
   
 0.945
LOC101071942
Uncharacterized protein.
   
 0.945
cgn
Cingulin a.
     
  0.937
LOC101075973
Cingulin b.
     
  0.937
Patj
InaD-like protein isoform X1.
   
 0.913
H2U479_TAKRU
Rho/rac guanine nucleotide exchange factor (GEF) 18b.
  
  
 
0.903
Epb41l4b
Erythrocyte membrane protein band 4.1 like 4B.
     
 0.901
stk11
Serine/threonine kinase 11; Belongs to the protein kinase superfamily.
     
  0.900
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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