STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
otud3OTU deubiquitinase 3. (354 aa)    
Predicted Functional Partners:
LOC101074730
Transmembrane phosphatase with tensin homology.
    
 0.848
pten
Phosphatase and tensin homolog; Tumor suppressor. Acts as a dual-specificity protein phosphatase, dephosphorylating tyrosine-, serine- and threonine- phosphorylated proteins. Also acts as a lipid phosphatase. Belongs to the PTEN phosphatase protein family.
    
 0.848
itfg2
Integrin alpha FG-GAP repeat containing 2.
  
 
 0.814
rpl13a
Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
  
 
 0.782
ENSTRUP00000049547
Mitochondrial ribosomal protein S6.
   
 
 0.760
mrpl20
Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.
  
 
 0.756
mrpl32
Mitochondrial ribosomal protein L32.
  
 
 0.754
znf598
Zinc finger protein 598.
      
 0.740
mrps16
Mitochondrial ribosomal protein S16.
  
 
 0.739
rps18
Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.
   
 
 0.733
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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