Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cecr5Uncharacterized protein. (440 aa)    
Predicted Functional Partners:
chkb
Choline kinase beta.
     
 0.702
Rpl39
Ribosomal protein L39.
    
 0.625
psat1
Phosphoserine aminotransferase.
    
 0.604
LOC115247848
Glutamine synthetase.
  
  
 0.591
tceanc2
Uncharacterized protein.
      
 0.511
hspd1
Heat shock 60 protein 1; Belongs to the chaperonin (HSP60) family.
  
   0.496
LOC101062194
Uncoupling protein 2; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.459
ada2
Adenosine deaminase 2a.
     
 0.405
LOC101072576
Adenosine deaminase 2b.
     
 0.405
LOC101070083
Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
    
 0.403
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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